PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0222s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 244aa    MW: 26362.3 Da    PI: 4.3599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0222s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17113163255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+++ +g
  Kalax.0222s0001.1.p 113 SYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAETAALAYDQAALAARG 163
                          69*******.**********44465..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-22112172No hitNo description
SuperFamilySSF541712.09E-21113172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-29113172IPR001471AP2/ERF domain
SMARTSM003803.4E-33113177IPR001471AP2/ERF domain
PfamPF008474.0E-12113163IPR001471AP2/ERF domain
PROSITE profilePS5103222.642113171IPR001471AP2/ERF domain
PRINTSPR003674.2E-10114125IPR001471AP2/ERF domain
PRINTSPR003674.2E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGSSYNLSPE NPYQVASSPS GFGCWGSPSD CYTNPPVPFT FLDSDEMQLL SILLDLDSSA  60
SSSSPSCISN EPASWIPDER ETTSPSEQSS PKDEGVADNA NPASKRKQEN EKSYRGVRKR  120
PWGKFAAEIR DSTRNGVRVW LGTFDSAETA ALAYDQAALA ARGSAAVLNF PEEIVRRSLE  180
GMIGGGEADG CSPVLALKEK HMTKRRSMSS GKSMAPKEEE ESVMVLEDLG TEYLEELLMI  240
SIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-26112171160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206287.17e-55hypothetical protein PRUPE_ppa016384mg
SwissprotQ8LDC81e-49ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM5W2C08e-55M5W2C0_PRUPE; Uncharacterized protein
STRINGGSMUA_Achr4P12060_0011e-49(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-36ethylene response factor 1